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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8880501_8881068_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8880501 - 8881068
Intron Length:
568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACCAAG
5'SS Class:
major
3'SS Sequence:
TGTGCTGCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTCAT
U12 Branch Point Sequence:
GGGGACTCATGT
Flanking Amino Acid:
KLADLREKLESDLAAQEGAA
Intron Amino Acid Position:
539

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.2
68.8
43.8
Major BPS
69.4
0.48
1.2
71.6
36.4
Major PPT
69.3
0.44
1
65.7
40.9
Minor 5ss
44.3
-0.6
2.7
56.9
47.4
Minor BPS
36.7
-0.9
2
46.59
44.8

Associated Gene:

Gene:
MYCBPAP
Ensembl Gene ID:
ENSAPLG00000003268
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043173
8876324 - 8888051
11728
ENSAPLT00000018157
8875131 - 8888051
12921
ENSAPLT00000003354
8876077 - 8888051
11975