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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8881962_8882296_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8881962 - 8882296
Intron Length:
335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATTGTG
5'SS Class:
major
3'SS Sequence:
CTCTTCCTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TCTTCCTCACAG
Flanking Amino Acid:
RWINCITSCRHIVGIAARLT
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
69
42.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
81.2
0.7
0.7
75.6
26.6
Minor 5ss
35.9
-1.6
3.3
41
45.3
Minor BPS
49.7
-0.1
2
60.81
46.6

Associated Gene:

Gene:
MYCBPAP
Ensembl Gene ID:
ENSAPLG00000003268
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003354
8876077 - 8888051
11975
ENSAPLT00000043173
8876324 - 8888051
11728
ENSAPLT00000018157
8875131 - 8888051
12921