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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8884359_8885081_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8884359 - 8885081
Intron Length:
723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
GGAGCCTCATTT
Flanking Amino Acid:
RSLPALFPGKGYRTGSEFWR
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72.1
31.2
Major BPS
69.8
0.49
1
61
37.5
Major PPT
76.5
0.6
0.8
70
36.5
Minor 5ss
26.3
-2.7
3.1
33.4
42
Minor BPS
45.8
-0.2
1.9
58.8
44.2

Associated Gene:

Gene:
MYCBPAP
Ensembl Gene ID:
ENSAPLG00000003268
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018157
8875131 - 8888051
12921
ENSAPLT00000003354
8876077 - 8888051
11975
ENSAPLT00000043173
8876324 - 8888051
11728