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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8885690_8886187_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8885690 - 8886187
Intron Length:
498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGATTT
5'SS Class:
major
3'SS Sequence:
CATTTCTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGTGCATTAAGA
Flanking Amino Acid:
MEALARGNTQLADLIEAPRK
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.2
73.6
37.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
84.1
0.77
0.8
81.4
30.2
Minor 5ss
38.8
-1.3
3.4
56.5
47.8
Minor BPS
54.3
0.13
2
69.26
42.8

Associated Gene:

Gene:
MYCBPAP
Ensembl Gene ID:
ENSAPLG00000003268
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043173
8876324 - 8888051
11728
ENSAPLT00000018157
8875131 - 8888051
12921
ENSAPLT00000003354
8876077 - 8888051
11975