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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8888714_8888806_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8888714 - 8888806
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTCAG
U12 Branch Point Sequence:
GGCTCAGCCACT
Flanking Amino Acid:
QQQGWLLLDGRGLRCTPQGL
Intron Amino Acid Position:
668

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
80.9
33.1
Major BPS
45.3
-0.3
1.7
51.1
46.3
Major PPT
71
0.47
0.9
61.8
40
Minor 5ss
33.4
-1.9
2.8
44.7
42.7
Minor BPS
37
-0.9
2.5
54.88
46.3

Associated Gene:

Gene:
RSAD1
Ensembl Gene ID:
ENSAPLG00000031173
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044367
8888464 - 8891750
3287