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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8889035_8889108_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8889035 - 8889108
Intron Length:
74

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
GCTGTGCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAC
U12 Branch Point Sequence:
CCGGCCCTAACA
Flanking Amino Acid:
RRRVALSPLEQLEELLALGL
Intron Amino Acid Position:
615

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
71.9
39.5
Major BPS
59.7
0.24
1.1
61.2
32.6
Major PPT
65.7
0.35
1
57.9
38.5
Minor 5ss
36.1
-1.6
2.9
48.1
41.6
Minor BPS
51.1
0.03
1.9
59.33
46.5

Associated Gene:

Gene:
RSAD1
Ensembl Gene ID:
ENSAPLG00000031173
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044367
8888464 - 8891750
3287