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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8889257_8889350_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8889257 - 8889350
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGCCCA
5'SS Class:
major
3'SS Sequence:
CGTGCCATCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTGCAC
U12 Branch Point Sequence:
TTCTCCTCCACG
Flanking Amino Acid:
RAEQYVGVGPGAHGRFVPWG
Intron Amino Acid Position:
566

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
62.5
43.9
Major BPS
50
-0
1.5
63.1
44.5
Major PPT
66
0.36
0.9
58.3
37
Minor 5ss
37.7
-1.4
3
40.8
45
Minor BPS
56.3
0.05
2.1
67.41
46.1

Associated Gene:

Gene:
RSAD1
Ensembl Gene ID:
ENSAPLG00000031173
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044367
8888464 - 8891750
3287