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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8890375_8890823_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8890375 - 8890823
Intron Length:
449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGAGAC
5'SS Class:
major
3'SS Sequence:
CCTGTGCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAC
U12 Branch Point Sequence:
CCCCCCCCACGC
Flanking Amino Acid:
GAVTAALYVHWPYCRKHCSY
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
67.6
31
Major BPS
45
-0.3
1.2
49.7
35.3
Major PPT
68.4
0.42
0.9
61.3
35.1
Minor 5ss
27.7
-2.6
3.3
37.1
40.7
Minor BPS
34.3
-1.2
2
36.18
40.9

Associated Gene:

Gene:
RSAD1
Ensembl Gene ID:
ENSAPLG00000031173
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044367
8888464 - 8891750
3287