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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8893369_8893453_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8893369 - 8893453
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
CGCTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAC
U12 Branch Point Sequence:
GCCTCTCCACCT
Flanking Amino Acid:
SQYPLTVSGKVQKYKLREQM
Intron Amino Acid Position:
576

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
54.8
0.12
1.3
66.4
39.9
Major PPT
82
0.72
0.8
76.3
32.3
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
42.5
-0.4
2
57.07
45.6

Associated Gene:

Gene:
ACSF2
Ensembl Gene ID:
ENSAPLG00000003799
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003910
8893318 - 8931525
38208