About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8895924_8896050_R


Intron Information:

Intron Rank:
11

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
8895924 - 8896050

Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GAG|GTGAACAGG

5'SS Class:
major

3'SS Sequence:
TCCCCTTCTGTAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TCAGCAC

U12 Branch Point Sequence:
AGCACCCTGAGG

Flanking Amino Acid:
TVGYIMPHTEAKIEDPETGK

Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
74.3
0.57
1
62.1
44.2

Major BPS
46.4
-0.2
1.4
53.6
41.6

Major PPT
77.2
0.61
0.7
72.7
25.5

Minor 5ss
32.7
-2
2.9
39.7
45.9

Minor BPS
42.4
-0.7
2
43.23
41.9

Associated Gene:

Gene:
ACSF2

Ensembl Gene ID:

Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

8893318 - 8931525
38208