About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8917020_8917460_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8917020 - 8917460
Intron Length:
441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
CTCTGTCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
GGTGACTTCATT
Flanking Amino Acid:
NEPINIQFTSGTTGSPKGAT
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
72.9
36.6
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
79
0.65
0.8
76.9
31.9
Minor 5ss
37.5
-1.4
3.3
56.3
41.9
Minor BPS
47.8
-0
2
66.32
44.3

Associated Gene:

Gene:
ACSF2
Ensembl Gene ID:
ENSAPLG00000003799
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003910
8893318 - 8931525
38208