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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8918247_8920093_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8918247 - 8920093
Intron Length:
1847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTGTG
5'SS Class:
major
3'SS Sequence:
TCTCCCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCTCCCTTCACA
Flanking Amino Acid:
ARELEFVIRKVGCKALVFPT
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
70
40.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
81
0.7
0.7
75.4
26.7
Minor 5ss
38.7
-1.3
3
49.5
46.8
Minor BPS
67.9
0.56
1.8
76.69
40.5

Associated Gene:

Gene:
ACSF2
Ensembl Gene ID:
ENSAPLG00000003799
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003910
8893318 - 8931525
38208