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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8921334_8924562_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8921334 - 8924562
Intron Length:
3229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGTC
5'SS Class:
strong_major
3'SS Sequence:
TTGTATTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGAGAT
U12 Branch Point Sequence:
TTGTATTTTACA
Flanking Amino Acid:
RKTFAQFKEEVDQAAAGLLA
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.7
34.4
Major BPS
64
0.35
1.3
60.7
45.9
Major PPT
85.7
0.8
0.8
80.1
37.1
Minor 5ss
35.5
-1.7
3.5
49.2
47.3
Minor BPS
58.1
0.25
1.8
71.98
40

Associated Gene:

Gene:
ACSF2
Ensembl Gene ID:
ENSAPLG00000003799
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003910
8893318 - 8931525
38208