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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8924759_8931457_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8924759 - 8931457
Intron Length:
6699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAGGGACG
5'SS Class:
major
3'SS Sequence:
TTTTCCTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTTCATACCT
Flanking Amino Acid:
PRRALLLLRGRALHTRRPAA
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.48
1.1
58.3
46.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
87.7
0.85
0.7
80.8
31.1
Minor 5ss
31.7
-2.1
3.3
41
45.2
Minor BPS
59.6
0.38
1.9
81.79
39.5

Associated Gene:

Gene:
ACSF2
Ensembl Gene ID:
ENSAPLG00000003799
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003910
8893318 - 8931525
38208