About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8935616_8935956_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8935616 - 8935956
Intron Length:
341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCTG
5'SS Class:
major
3'SS Sequence:
TTCCTTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAC
U12 Branch Point Sequence:
TGTGCTCTTACA
Flanking Amino Acid:
TLPVSFAQLKNLKWLDLKDN
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.7
44.4
Major BPS
69.2
0.48
1
61
37.1
Major PPT
85.7
0.8
0.7
80.9
24.3
Minor 5ss
33.7
-1.9
3.5
46.7
48.6
Minor BPS
48
-0.1
2
64.7
41.4

Associated Gene:

Gene:
LRRC59
Ensembl Gene ID:
ENSAPLG00000004364
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004533
8934294 - 8938504
4211