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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8943301_8943758_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8943301 - 8943758
Intron Length:
458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
CCAATCTTATCT
Flanking Amino Acid:
MTVVEVEKYFRCLRAQSKKR
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
84.8
0.78
0.7
84.8
30
Minor 5ss
32.5
-2
3.3
47.4
48
Minor BPS
52
0.14
1.7
64.71
45.7

Associated Gene:

Gene:
EME1
Ensembl Gene ID:
ENSAPLG00000022015
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029313
8941092 - 8945432
4341
ENSAPLT00000023337
8941092 - 8945432
4341
ENSAPLT00000044703
8941092 - 8945432
4341