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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8963438_8963542_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
8963438 - 8963542
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGTGAGA
5'SS Class:
major
3'SS Sequence:
CGGGGACGCCCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACCTGAC
U12 Branch Point Sequence:
AGGAACCTGACG
Flanking Amino Acid:
PDSPGVPVSKLAVLQQGDTG
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.1
58.5
42
Major BPS
60.1
0.25
1
51
35.6
Major PPT
48.8
-0
1.1
35.3
40.4
Minor 5ss
24.9
-2.9
3.1
30.9
42.6
Minor BPS
42.9
-0.7
1.9
44.55
40.8

Associated Gene:

Gene:
XYLT2
Ensembl Gene ID:
ENSAPLG00000004697
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004897
8956986 - 8966403
9418