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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8979696_8980204_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8979696 - 8980204
Intron Length:
509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAACAAC
5'SS Class:
major
3'SS Sequence:
CTTTATTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTCTTCGTAACA
Flanking Amino Acid:
CSKPCPDFELGSRYIIPANL
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
67.4
37.9
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
85
0.79
0.7
80.9
30.8
Minor 5ss
39.2
-1.2
3
48.3
42.3
Minor BPS
64.9
0.46
2
78.35
38.8

Associated Gene:

Gene:
C17orf58
Ensembl Gene ID:
ENSAPLG00000030855
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034258
8979515 - 8980391
877