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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8985751_8987013_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8985751 - 8987013
Intron Length:
1263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTTATA
Flanking Amino Acid:
VQKLKGFKASRL*
Intron Amino Acid Position:
2995

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
75
38.1
Major BPS
100
1.24
0.5
100
0
Major PPT
92.5
0.96
0.6
88.3
21.4
Minor 5ss
43.2
-0.7
2.9
56.2
47.9
Minor BPS
64.8
0.46
1.9
80.63
34.6

Associated Gene:

Gene:
BPTF
Ensembl Gene ID:
ENSAPLG00000005839
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046597
8985744 - 9040837
55094
ENSAPLT00000027869
8985744 - 9040837
55094
ENSAPLT00000023968
8985744 - 9040837
55094