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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8989934_8990798_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8989934 - 8990798
Intron Length:
865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTTCT
5'SS Class:
major
3'SS Sequence:
TTGGATCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTGGATC
Flanking Amino Acid:
CICRTPYDESQFYIGCDRCQ
Intron Amino Acid Position:
2659

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
71.6
34.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76.6
0.6
1
69.8
41.2
Minor 5ss
39.6
-1.2
2.9
56.3
41.9
Minor BPS
61.2
0.33
1.4
73.19
31.6

Associated Gene:

Gene:
BPTF
Ensembl Gene ID:
ENSAPLG00000005839
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023968
8985744 - 9040837
55094
ENSAPLT00000006070
8984961 - 9040454
55494
ENSAPLT00000046597
8985744 - 9040837
55094
ENSAPLT00000036325
8984961 - 9040837
55877
ENSAPLT00000027869
8985744 - 9040837
55094