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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8990973_8994268_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8990973 - 8994268
Intron Length:
3296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TGAATACTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCATTGTGAATA
Flanking Amino Acid:
CICKTPYDESKFYIGCDLCT
Intron Amino Acid Position:
2601

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
80.7
33.7
Major BPS
100
1.24
0.5
100
0
Major PPT
67.6
0.4
1
63.6
42.7
Minor 5ss
33.7
-1.9
2.8
42.7
38.3
Minor BPS
47.7
-0.1
2.1
60.19
40.3

Associated Gene:

Gene:
BPTF
Ensembl Gene ID:
ENSAPLG00000005839
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023968
8985744 - 9040837
55094
ENSAPLT00000006070
8984961 - 9040454
55494
ENSAPLT00000046597
8985744 - 9040837
55094
ENSAPLT00000036325
8984961 - 9040837
55877
ENSAPLT00000027869
8985744 - 9040837
55094