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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8996998_8998283_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8996998 - 8998283
Intron Length:
1286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCAGACT
5'SS Class:
major
3'SS Sequence:
TATCATCCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTGTTTTGGATT
Flanking Amino Acid:
SQGQPQQPAQVVMKQNAVIE
Intron Amino Acid Position:
2563

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1
65.7
39.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77.1
0.61
0.9
69.7
36.1
Minor 5ss
27.7
-2.6
3.3
40.5
45.4
Minor BPS
57.4
0.31
1.4
74.31
37.3

Associated Gene:

Gene:
BPTF
Ensembl Gene ID:
ENSAPLG00000005839
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027869
8985744 - 9040837
55094
ENSAPLT00000024221
8984961 - 9028428
43468
ENSAPLT00000023968
8985744 - 9040837
55094
ENSAPLT00000046597
8985744 - 9040837
55094
ENSAPLT00000036325
8984961 - 9040837
55877