Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9000698_9001207_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9000698 - 9001207

Intron Length:

510

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTAGGTTCA

5'SS Class:

major

3'SS Sequence:

TACTCTCTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTTTTATCA

Flanking Amino Acid:

LVVQQGILPASQTQQVVTQI

Intron Amino Acid Position:

2098

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.9

0.4

1.1

62.7

38.7

Major BPS

96.5

1.15

0.6

34.2

Major PPT

82.6

0.73

0.8

76.3

Minor 5ss

41.3

-1

3.1

55.2

43.1

Minor BPS

71.9

0.68

1.5

82.41

32.7

Associated Gene:

Gene:

BPTF

Ensembl Gene ID:

ENSAPLG00000005839

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036325

8984961 - 9040837

55877

ENSAPLT00000024221

8984961 - 9028428

43468