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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9000698_9001222_R

Intron Information:

Intron Rank:
22
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
9000698 - 9001222
Intron Length:
525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTCTTC
5'SS Class:
weak_major
3'SS Sequence:
TACTCTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATCA
Flanking Amino Acid:
IIRTPLVVQQGQTQQVVTQI
Intron Amino Acid Position:
1938

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
67.7
38.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.6
0.73
0.8
76.3
32
Minor 5ss
66
0.54
2.2
76.6
39.1
Minor BPS
71.9
0.68
1.5
82.41
32.7

Associated Gene:

Gene:
BPTF
Ensembl Gene ID:
ENSAPLG00000005839
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046597
8985744 - 9040837
55094
ENSAPLT00000027869
8985744 - 9040837
55094
ENSAPLT00000023968
8985744 - 9040837
55094
ENSAPLT00000006070
8984961 - 9040454
55494