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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9006472_9006727_R

Intron Information:

Intron Rank:
15
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
9006472 - 9006727
Intron Length:
256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTTTT
5'SS Class:
weak_major
3'SS Sequence:
TAATCTGTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
CTGCTATTAACG
Flanking Amino Acid:
APPGGGTTRTETSETEITTT
Intron Amino Acid Position:
1606

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.1
80.5
35
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
71.6
0.49
1
66.1
40.2
Minor 5ss
77.1
0.91
1.7
84.6
33.2
Minor BPS
52.7
-0
1.7
57.43
44

Associated Gene:

Gene:
BPTF
Ensembl Gene ID:
ENSAPLG00000005839
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024221
8984961 - 9028428
43468
ENSAPLT00000023968
8985744 - 9040837
55094
ENSAPLT00000046597
8985744 - 9040837
55094
ENSAPLT00000006070
8984961 - 9040454
55494
ENSAPLT00000036325
8984961 - 9040837
55877
ENSAPLT00000027869
8985744 - 9040837
55094