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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9006853_9007821_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9006853 - 9007821
Intron Length:
969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTACT
5'SS Class:
strong_major
3'SS Sequence:
GCTCTGTTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTACTTTAAAA
Flanking Amino Acid:
SPRPTFGITWRYRLQTVKSL
Intron Amino Acid Position:
1564

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
86.2
29.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
65.8
0.36
1
65.1
41.2
Minor 5ss
44.5
-0.6
2.5
60.9
43.5
Minor BPS
74
0.75
1.3
81.55
33.1

Associated Gene:

Gene:
BPTF
Ensembl Gene ID:
ENSAPLG00000005839
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024221
8984961 - 9028428
43468
ENSAPLT00000046597
8985744 - 9040837
55094
ENSAPLT00000023968
8985744 - 9040837
55094
ENSAPLT00000036325
8984961 - 9040837
55877
ENSAPLT00000006070
8984961 - 9040454
55494
ENSAPLT00000027869
8985744 - 9040837
55094