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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9010250_9010543_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9010250 - 9010543
Intron Length:
294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATATAC
5'SS Class:
major
3'SS Sequence:
TTATTCTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TTATTCTTCACA
Flanking Amino Acid:
SENSDHAKDKVEKEIDGEND
Intron Amino Acid Position:
1135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
70.1
29.8
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
84.7
0.78
0.8
80.1
31.7
Minor 5ss
32.9
-2
3
41.4
45.3
Minor BPS
69.3
0.6
1.7
79.69
36.4

Associated Gene:

Gene:
BPTF
Ensembl Gene ID:
ENSAPLG00000005839
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046597
8985744 - 9040837
55094
ENSAPLT00000027869
8985744 - 9040837
55094
ENSAPLT00000023968
8985744 - 9040837
55094