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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9010250_9010603_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9010250 - 9010603
Intron Length:
354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGAAA
5'SS Class:
major
3'SS Sequence:
TTATTCTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TTATTCTTCACA
Flanking Amino Acid:
TLEKVKEEKSVEKEIDGEND
Intron Amino Acid Position:
755

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
0.9
73.3
32.3
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
84.7
0.78
0.8
80.1
31.7
Minor 5ss
25.5
-2.8
3
29.9
43.2
Minor BPS
69.3
0.6
1.7
79.69
36.4

Associated Gene:

Gene:
BPTF
Ensembl Gene ID:
ENSAPLG00000005839
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024221
8984961 - 9028428
43468
ENSAPLT00000006070
8984961 - 9040454
55494
ENSAPLT00000036325
8984961 - 9040837
55877