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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9015921_9019252_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9015921 - 9019252
Intron Length:
3332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AAAACTAAAAAT
Flanking Amino Acid:
EQDVEKVKTEEETGQMIPSN
Intron Amino Acid Position:
633

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.7
33.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.1
0.79
0.7
81.1
30.9
Minor 5ss
27.9
-2.5
3.5
37.1
47.5
Minor BPS
42.2
-0.5
1.9
55.83
39.5

Associated Gene:

Gene:
BPTF
Ensembl Gene ID:
ENSAPLG00000005839
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046597
8985744 - 9040837
55094