About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9018739_9019252_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9018739 - 9019252
Intron Length:
514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGAA
5'SS Class:
strong_major
3'SS Sequence:
CGTTTTACTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TATCCCTAAAGT
Flanking Amino Acid:
EQDVEKVKTEEATVVGDKSN
Intron Amino Acid Position:
633

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.7
33.5
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
75.7
0.58
0.8
70.1
35.3
Minor 5ss
27.9
-2.5
3.5
37.1
47.5
Minor BPS
58.7
0.35
2
78.69
43.2

Associated Gene:

Gene:
BPTF
Ensembl Gene ID:
ENSAPLG00000005839
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027869
8985744 - 9040837
55094
ENSAPLT00000024221
8984961 - 9028428
43468
ENSAPLT00000023968
8985744 - 9040837
55094
ENSAPLT00000036325
8984961 - 9040837
55877