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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9019454_9020633_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9019454 - 9020633
Intron Length:
1180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
CATTTTATTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTATATTGATG
Flanking Amino Acid:
SNKSFLSAANDEILEVIRAR
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
79.8
35.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.1
0.65
0.8
74.3
34.7
Minor 5ss
43.1
-0.8
2.9
54.5
43.9
Minor BPS
48.8
-0.2
1.7
56.66
38.8

Associated Gene:

Gene:
BPTF
Ensembl Gene ID:
ENSAPLG00000005839
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006070
8984961 - 9040454
55494
ENSAPLT00000036325
8984961 - 9040837
55877
ENSAPLT00000027869
8985744 - 9040837
55094
ENSAPLT00000024221
8984961 - 9028428
43468
ENSAPLT00000023968
8985744 - 9040837
55094
ENSAPLT00000046597
8985744 - 9040837
55094