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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9020858_9027571_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9020858 - 9027571
Intron Length:
6714

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
AATACTCTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TAAACATTAATA
Flanking Amino Acid:
KYWFLNRRIIIEEDSESEKD
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
85.3
25.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
70
0.45
0.9
62.5
38.7
Minor 5ss
37.5
-1.4
2.8
46.9
41.8
Minor BPS
60.4
0.32
1.6
68.03
37.6

Associated Gene:

Gene:
BPTF
Ensembl Gene ID:
ENSAPLG00000005839
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023968
8985744 - 9040837
55094
ENSAPLT00000046597
8985744 - 9040837
55094
ENSAPLT00000006070
8984961 - 9040454
55494
ENSAPLT00000036325
8984961 - 9040837
55877
ENSAPLT00000027869
8985744 - 9040837
55094
ENSAPLT00000024221
8984961 - 9028428
43468