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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_904222_906303_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
904222 - 906303
Intron Length:
2082

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTAC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTCAC
U12 Branch Point Sequence:
TGCTTTTTCACA
Flanking Amino Acid:
FKSMLMDVEAALTEARDIHL
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
75.2
30.5
Major BPS
64.5
0.36
1.2
69.3
37.7
Major PPT
83.7
0.76
0.8
79.1
32.9
Minor 5ss
31.6
-2.1
3.2
40.1
46.3
Minor BPS
56.6
0.2
1.7
66.82
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025354
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036302
904023 - 915481
11459