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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9044967_9045243_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9044967 - 9045243
Intron Length:
277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TAAAGCAAAACA
Flanking Amino Acid:
PGVLCPTINQVMDWMCLLLD
Intron Amino Acid Position:
651

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
84
0.77
0.8
81.3
36.4
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
42.5
-0.5
2.2
55.39
42.8

Associated Gene:

Gene:
NOL11
Ensembl Gene ID:
ENSAPLG00000006588
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006904
9044435 - 9056434
12000