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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9046229_9046707_R

Intron Information:

Intron Rank:
14
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
9046229 - 9046707
Intron Length:
479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTATCCTCT
5'SS Class:
strong_minor
3'SS Sequence:
TAATACTGCACAG|A
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
ATTTTCTCAATA
Flanking Amino Acid:
CPVGPRKAALLNAVLHSAYS
Intron Amino Acid Position:
593

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.6
-0
1.2
50.6
40.8
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
64.1
0.32
1
57.6
42.5
Minor 5ss
87.3
1.26
1.2
88.5
25.7
Minor BPS
69.6
0.61
1.4
77.68
32.8

Associated Gene:

Gene:
NOL11
Ensembl Gene ID:
ENSAPLG00000006588
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006904
9044435 - 9056434
12000