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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9047873_9048133_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9047873 - 9048133
Intron Length:
261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACAATC
5'SS Class:
major
3'SS Sequence:
CATATTCTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTTTCATATTC
Flanking Amino Acid:
QMVQKRELSYSLCPDLMAVA
Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
75
35.2
Major BPS
100
1.24
0.5
100
0
Major PPT
79.7
0.67
0.9
72.6
37.2
Minor 5ss
38.1
-1.3
3.1
51.9
44.9
Minor BPS
50.9
0.01
1.9
66.36
39.9

Associated Gene:

Gene:
NOL11
Ensembl Gene ID:
ENSAPLG00000006588
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006904
9044435 - 9056434
12000