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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9051388_9052185_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9051388 - 9052185
Intron Length:
798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTAGA
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
GTTCTCTCATTT
Flanking Amino Acid:
SLAASGEESKECLTIWNTKF
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
78
38.6
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
80.7
0.69
0.8
80.7
31.1
Minor 5ss
40.6
-1
2.6
51.9
44.6
Minor BPS
49.5
0.04
1.8
70.21
40.9

Associated Gene:

Gene:
NOL11
Ensembl Gene ID:
ENSAPLG00000006588
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006904
9044435 - 9056434
12000