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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9052384_9052779_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9052384 - 9052779
Intron Length:
396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTTAT
5'SS Class:
major
3'SS Sequence:
TTTTCTCTGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
TTTTCTCTGACA
Flanking Amino Acid:
KKQIITLLCLCSNDSVYKVL
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.1
77
34.4
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
83.2
0.75
0.9
80.4
31.7
Minor 5ss
43.9
-0.7
2.9
59
45.5
Minor BPS
69.9
0.62
1.6
83.23
30.5

Associated Gene:

Gene:
NOL11
Ensembl Gene ID:
ENSAPLG00000006588
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006904
9044435 - 9056434
12000