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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9052919_9053362_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9052919 - 9053362
Intron Length:
444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
CCTTCTATAAAT
Flanking Amino Acid:
QPVVIFITEKDGDFFVYVQK
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
78.7
0.65
0.9
76.9
37.3
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
57.3
0.31
1.8
73.73
43.2

Associated Gene:

Gene:
NOL11
Ensembl Gene ID:
ENSAPLG00000006588
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006904
9044435 - 9056434
12000