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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9053837_9054224_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9053837 - 9054224
Intron Length:
388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTGTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAA
U12 Branch Point Sequence:
TTTTTCTGTATA
Flanking Amino Acid:
VNLDKVFKATLSADVYRIHS
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
82.6
31.3
Major BPS
69.1
0.48
0.9
69.6
26.6
Major PPT
83.8
0.76
0.8
80.6
31.5
Minor 5ss
45.2
-0.5
2.8
62.5
42.2
Minor BPS
59.4
0.29
1.8
75.52
36.2

Associated Gene:

Gene:
NOL11
Ensembl Gene ID:
ENSAPLG00000006588
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006904
9044435 - 9056434
12000