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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9054282_9055006_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9054282 - 9055006
Intron Length:
725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATTC
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTCTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTGTGCTTAAAA
Flanking Amino Acid:
HEYIAVHDDKVLRIWKDEDV
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
81.1
26.4
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
72.3
0.5
1
75.4
33.4
Minor 5ss
37.1
-1.5
3.2
49.9
46.6
Minor BPS
65.4
0.48
1.9
76.54
40.6

Associated Gene:

Gene:
NOL11
Ensembl Gene ID:
ENSAPLG00000006588
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006904
9044435 - 9056434
12000