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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9066353_9069753_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9066353 - 9069753
Intron Length:
3401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
GAACTTTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
CAATTTTGAACT
Flanking Amino Acid:
QAFAWVDEWYDMTMDDVREY
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
75.6
0.58
1
68.5
41.6
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
59.3
0.37
1.4
70.34
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007073
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007363
9066198 - 9108741
42544