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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9069818_9070551_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9069818 - 9070551
Intron Length:
734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
AGATATTTAACC
Flanking Amino Acid:
QTRVEQFVHKVVRDILLIGH
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1.2
77.6
32.8
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
80.5
0.69
0.8
74.8
33.5
Minor 5ss
27.4
-2.6
2.9
31.8
42.6
Minor BPS
63.5
0.4
1.5
67.77
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007073
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007363
9066198 - 9108741
42544