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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9070708_9079174_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9070708 - 9079174
Intron Length:
8467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
TTCTCCAGGATT
Flanking Amino Acid:
IPERYYKESEDPKYFKSQKT
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
28.9
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
88.9
0.88
0.7
84
31
Minor 5ss
30.7
-2.2
3.3
40.8
45.7
Minor BPS
54.7
0.23
1.8
76.85
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007073
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007363
9066198 - 9108741
42544