About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9079271_9089308_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9079271 - 9089308
Intron Length:
10038

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTAACTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
GTTTCTTTAACT
Flanking Amino Acid:
YEDNKGSNDSIFDNEAKDLE
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.3
72.7
44.5
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
79.8
0.67
0.9
73.7
36.5
Minor 5ss
40.3
-1.1
2.8
47
41.7
Minor BPS
88.8
1.3
0.9
96.8
27.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007073
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007363
9066198 - 9108741
42544