Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9089381_9100784_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9089381 - 9100784

Intron Length:

11404

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAG|GCATGGAAT

5'SS Class:

strong_major

3'SS Sequence:

TCTTTTATTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTCTTTTATT

Flanking Amino Acid:

VPKIFYVTEKCSFLPKFSIH

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.86

40.1

Major BPS

96.5

1.15

0.6

34.2

Major PPT

89.5

0.89

0.7

85.1

27.9

Minor 5ss

29.7

-2.3

4.1

47.3

48.3

Minor BPS

75.6

0.89

1.5

91.64

31.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007073

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007363

9066198 - 9108741

42544