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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9100843_9106596_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9100843 - 9106596
Intron Length:
5754

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTTTTTATTT
Flanking Amino Acid:
QLTEKRVYLNSKLPSWARAV
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.7
1.15
0.7
87.7
23.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
94.3
1
0.6
93.1
23.6
Minor 5ss
22.6
-3.2
3.8
32.5
42.3
Minor BPS
63.6
0.51
1.5
78.46
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007073
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007363
9066198 - 9108741
42544