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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9106746_9108699_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9106746 - 9108699
Intron Length:
1954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGCGTTCA
5'SS Class:
major
3'SS Sequence:
TTTTGCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTGTTCTTGATT
Flanking Amino Acid:
VYKLCLGCVPYRIGQLYMIS
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.9
0.3
1.1
58.9
36.5
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
89.9
0.9
0.7
84.7
30.1
Minor 5ss
36.2
-1.6
3
46.4
43
Minor BPS
76.2
0.91
1.1
86.06
34.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007073
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007363
9066198 - 9108741
42544