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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9152045_9152276_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9152045 - 9152276
Intron Length:
232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CATCCCATCACT
Flanking Amino Acid:
LLSLEKQTRTASDMVSTSRI
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
76.5
39.2
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
85
0.79
0.9
79.9
37.7
Minor 5ss
36.6
-1.5
2.7
46.7
41.7
Minor BPS
49.8
0.07
2.1
71.79
44.5

Associated Gene:

Gene:
PSMD12
Ensembl Gene ID:
ENSAPLG00000007388
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007702
9149799 - 9157529
7731