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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9154344_9154899_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9154344 - 9154899
Intron Length:
556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTACTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTCTGTTTAATT
Flanking Amino Acid:
IQAESEKWQQALKSVVLYVI
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
77.5
30.5
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
69.6
0.44
1
65.7
39.6
Minor 5ss
33.1
-1.9
3
42.8
44.4
Minor BPS
67.9
0.64
1.7
82.98
39.3

Associated Gene:

Gene:
PSMD12
Ensembl Gene ID:
ENSAPLG00000007388
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007702
9149799 - 9157529
7731